normalizeCounts: Get normalized count
In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
Description
Usage
Arguments
Value
Description
function computes the estimated size factor according to the choice and level of the repertoire, and the
Usage
1
2
3
4
5
normalizeCounts(
x,
method = c("Chao", "iChao", "worChao", "Chao.gmmean", "Chao.median"),
UsePseudoRef = TRUE
)
Arguments
x
a RepSeqExperiment.
method
method used for normalization.
UsePseudoRef
a boolen indicatif whether a reference repertoire will be used for normalizaition.
Value
an object of class RepSeqExperiment with normalized counts.
ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
function computes the estimated size factor according to the choice and level of the repertoire, and the
Usage
1 2 3 4 5 | normalizeCounts(
x,
method = c("Chao", "iChao", "worChao", "Chao.gmmean", "Chao.median"),
UsePseudoRef = TRUE
)
|
Arguments
x |
a RepSeqExperiment. |
method |
method used for normalization. |
UsePseudoRef |
a boolen indicatif whether a reference repertoire will be used for normalizaition. |
Value
an object of class RepSeqExperiment with normalized counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.