plotFreqVpJ: plot frequency

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function plot the histogram of counts for a sample broken into 6 intervals 1, ]1, 10], ]10, 100], ]100, 1000], ]1000, 10000], ]10000, more].

Usage

plotFreqVpJ(x, sampleName = NULL)

Arguments

x	an object of class RepSeqExperiment
sampleName	sample to be plotted. If NULL the first sample name is used.

Value

a bar plot

Examples

## Not run: 
# The package RepSeqData contains example datasets 
library(RepSeqData)
snames <- rownames(sData(RepSeqData))
# plot histogramme of counts of the first sample.
plotFreqVpJ(x = RepSeqData, sampleName = snames[1])

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.