plotRenyiProfiles: plot Renyi's profiles

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function plots Renyi's entropy profile for all samples in a RepSeqExperiment object.

Usage

plotRenyiProfiles(
  x,
  alpha = c(0, 0.25, 0.5, 1, 2, 4, 8, 16, 32, 64, Inf),
  level = c("VpJ", "V", "J", "VJ", "CDR3aa"),
  colorBy = NULL
)

Arguments

x	an object of class RepSeqExperiment
alpha	a vector of parameters for estimating Renyi's entropy.
level	level of repertoire to estimated
colorBy	name of a factor in sample information data (run sData(x))

Value

a graph

Examples

## Not run: 
# The package RepSeqData contains example datasets 
library(RepSeqData)
colnames(sData(RepSeqData))
# plot Renyi's profiles for at level "V" gene and color curves by project.
plotRenyiProfiles(x = RepSeqData, level = "V", colorBy = "project")

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.