plot2v2count: sample against sample plot

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function plots

Usage

plot2v2count(
  x,
  level = c("V", "J", "VJ", "VpJ", "CDR3aa"),
  libs = NULL,
  scale = c("counts", "log")
)

Arguments

x	an object of class RepSeqExperiment
level	choose between V, J, VJ, VpJ, CDR3aa
libs	a vector of characters of length 2 containing the sample names to plot.
scale	normal or log10 scale of axes

Value

a dot plot

Examples

## Not run: 
# The package RepSeqData contains example datasets 
library(RepSeqData)
rownames(sData(RepSeqData))
plot correlation of counts between 2 samples 
plot2v2count(x = RepSeqData, level = "V", libs = c("S01", "S02"), scale = "log")    

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.