plotDistribVpJ: frequency of clonotype by its rank

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function

Usage

plotDistribVpJ(x, colorBy = NULL, aggreg = c("sum", "mean"))

Arguments

x	an object of class RepSeqExperiment
colorBy	column name in sample Data indicating groups of samples
aggreg	aggregation of counts by sum or by mean

Value

a plot

Examples

## Not run: 
# The package RepSeqData contains example datasets 
library(RepSeqData)
get the names of columns
names(sData(RepSeqData))
# plot mean distribution of clonotypes by project
plotDistribVpJ(x = RepSeqData, colorBy = "project", aggreg = "mean")

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.