filterCount: filter clonotypes based on counts
In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)
Description
Usage
Arguments
Value
Examples
Description
function filters out every clonotypes having low counts across all samples.
Usage
1
filterCount(x, n = 1)
Arguments
x
an object of class [RepSeqExperiment]
n
an integer below this value clonotypes will be filtered out
Value
an object of class RepSeqExperiment
Examples
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## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
# filter clonotypes having less than 3 counts accros all samples
filterdata <- filterCount(RepSeqData, n=3)
filterdata
## End(Not run)
ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.
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Description Usage Arguments Value Examples
Description
function filters out every clonotypes having low counts across all samples.
Usage
1 | filterCount(x, n = 1)
|
Arguments
x |
an object of class [ |
n |
an integer below this value clonotypes will be filtered out |
Value
an object of class RepSeqExperiment
Examples
1 2 3 4 5 6 7 8 | ## Not run:
# The package RepSeqData contains example datasets
library(RepSeqData)
# filter clonotypes having less than 3 counts accros all samples
filterdata <- filterCount(RepSeqData, n=3)
filterdata
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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