concateRepSeq: concatenate 2 RepSeqExperiment objects

In ph-pham/RepSeq: Analysis of High-throughput sequencing repertoire data (RepSeqTools)

Description

function concateRepSeq allow to concatenate 2 RepSeqExperiement objects. Overlaps in sample names are not allowed.

Usage

concateRepSeq(a, b)

Arguments

a	first RepSeqExperiment object.
b	second RepSeqExperiment object.

Value

a RepSeqExperiment object.

Examples

## Not run: 
# The package RepSeqData contains example datasets 
l <- list.files(system.file(file.path('extdata/mixcr'), 
                         package = 'RepSeqData'), 
                         full.names = TRUE)
l
# first element of the vector
filelist1 <- l[1:3]
dataset1 <- readClonotypeSet(fileList = filelist1, 
                   aligner = "MiXCR", 
                   chain = "B", 
                   keep.ambiguous=FALSE, 
                   keep.unproductive=FALSE, 
                   aa.th=8)
dataset1
filelist2 <- l[4:6]
dataset2 <- readClonotypeSet(fileList = filelist2, 
                   aligner = "MiXCR", 
                   chain = "B", 
                   keep.ambiguous=FALSE, 
                   keep.unproductive=FALSE, 
                   aa.th=8)
dataset2
dataset <- concateRepSeq(a = dataset1, b = dataset2)
dataset

## End(Not run)

ph-pham/RepSeq documentation built on Dec. 22, 2021, 7:47 a.m.