API for ph-pham/RepSeq
Analysis of High-throughput sequencing repertoire data (RepSeqTools)
| Global functions | |
|---|---|
| Chaowor | Man page |
| History | Man page |
| History,RepSeqExperiment-method | Man page |
| History<- | Man page |
| History<-,RepSeqExperiment-method | Man page |
| RepSeq | Man page |
| RepSeqExp | Man page |
| RepSeqExperiment | Man page |
| RepSeqExperiment-class | Man page |
| [,RepSeqExperiment,ANY,ANY,ANY-method | Man page |
| [,RepSeqExperiment-method | Man page |
| assay | Man page |
| assay,RepSeqExperiment-method | Man page |
| assay<- | Man page |
| assay<-,RepSeqExperiment-method | Man page |
| basicIndices | Man page Source code |
| concateRepSeq | Man page |
| countFeatures | Man page |
| definition | Source code Source code Source code |
| divLevel | Man page |
| dropSamples | Man page |
| estimateSF | Man page Source code |
| filetype | Man page |
| filterClonotypes | Man page |
| filterCount | Man page |
| filterFrequency | Man page |
| getOverlaps | Man page |
| getPrivates | Man page |
| getSingleton | Man page |
| iChao | Man page |
| is.RepSeqExperiment | Man page |
| mData | Man page |
| mData,RepSeqExperiment-method | Man page |
| mData<- | Man page |
| mData<-,RepSeqExperiment-method | Man page |
| muScore | Man page |
| muScoreM | Man page Source code |
| muScoreOB | Man page Source code |
| named.contr.sum | Man page |
| names | Man page |
| names,RepSeqExperiment-method | Man page |
| names<-,RepSeqExperiment-method | Man page |
| normalizeCounts | Man page |
| parseAdaptive | Man page |
| parseClonotypeR | Man page Source code |
| parseMiXCR | Man page |
| parseRTCR | Man page |
| perturbation | Man page |
| plot2v2count | Man page |
| plotCountVJ | Man page Source code |
| plotDissimilarityMatrix | Man page |
| plotDistribVpJ | Man page |
| plotFreqVpJ | Man page |
| plotFrequencySpectrum | Man page |
| plotMDS | Man page |
| plotPropVJ | Man page |
| plotRenyiProfiles | Man page |
| plotSpectratype | Man page Source code |
| plotSpectratypeV | Man page |
| plotVenn | Man page |
| plotmuScore | Man page |
| rarefyRepSeqExp | Man page |
| raretabRepSeq | Man page |
| readClonotypeSet | Man page |
| readClonotypes | Man page |
| renyiProfiles | Man page |
| sData | Man page |
| sData,RepSeqExperiment-method | Man page |
| sData<- | Man page |
| sData<-,RepSeqExperiment-method | Man page |
| segmentUsage | Man page |
| show,RepSeqExperiment-method | Man page |
| toDESeq2 | Man page Source code |
