calculateDendrogram: Calculate a clustering dendgrogram based on correlation

In pinin4fjords/shinyngs: Shiny apps for NGS data

Calculate a clustering dendgrogram based on correlation

Description

Calculate a clustering dendgrogram based on correlation

Usage

calculateDendrogram(
  plotmatrix,
  cor_method = "spearman",
  cluster_method = "ward.D2"
)

Arguments

plotmatrix	Expression/ other data matrix
cor_method	'spearman' or 'perason'
cluster_method	Clustering method to pass to hclust (Default: 'ward.D2')

Value

output Object of class 'dist'

Examples

data(airway, package = "airway")
mymatrix <- assays(airway)[[1]]
calculateDendrogram(mymatrix)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.