clustering: The server function of the clustering module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The server function of the clustering module

Description

This module plots the expression profiles (scaled for comparison) of the selected rows of the input matrix provided by the selectmatrix module.

Usage

clustering(input, output, session, eselist)

Arguments

input	Input object
output	Output object
session	Session object
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

The clara method, a fast approximation of partitioning about medoids, is used to produce the clusters. As well as defining the input matrix users can decide how the clusters are drawn and how many clusters should be generated.

This function is not called directly, but rather via callModule() (see example).

Examples

callModule(clustering, "myid", eselist)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.