dexseqplot: The server function of the dexseqplot Shiny module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The server function of the dexseqplot Shiny module

Description

This function is not called directly, but rather via callModule() (see example).

Usage

dexseqplot(input, output, session, eselist)

Arguments

input	Input object
output	Output object
session	Session object
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

This module produces a differential exon usage plot using the plotDEXSeq function of the DEXSeq package.

For the plot to be displayed, the dexseq_results slot must be filled on at least one of the component ExploratorySummarizedExperiment objects of the input ExploratorySummarizedExperimentList.

dexseq_results must be a list of DEXSeqResults objects corresponding to the contrasts listed in the contrasts slot of the ExploratorySummarizedExperiment.

Examples

callModule(dexseqplot, "dexseqplot", eselist)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.