dexseqtable: The server function of the dexseqtable module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The server function of the dexseqtable module

Description

This module produces a differential exon usage table based on the output DEXSeqResults object of the DEXSeq package.

Usage

dexseqtable(
  input,
  output,
  session,
  eselist,
  allow_filtering = TRUE,
  getDEUGeneID = NULL,
  show_controls = TRUE,
  page_length = 15,
  link_to_deu_plot = TRUE
)

Arguments

input	Input object
output	Output object
session	Session object
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects
allow_filtering	Allow user filtering of results (default: TRUE)? Deactivated by the dexseqplot module, which uses it for showing gene-specific results.
getDEUGeneID	Reactive expression returning a gene ID.
show_controls	Passed to simpletable, spcifies whether the various datatables controls are displayed (default: TRUE).
page_length	Passed to simpletable, spcifies the number of rows to display (default: 15).
link_to_deu_plot	Link label fields to the plots produced by dexseqplot? (default: TRUE)

Details

For the table to be displayed, the dexseq_results slot must be filled on at least one of the component ExploratorySummarizedExperiment objects of the input ExploratorySummarizedExperimentList.

dexseq_results must be a list of DEXSeqResults objects corresponding to the contrasts listed in the contrasts slot of the ExploratorySummarizedExperiment.

This function is not called directly, but rather via callModule() (see example).

Examples

callModule(dexseqtable, "dexseqtable", eselist)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.