Files in pinin4fjords/shinyngs
Shiny apps for NGS data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ExploratorySummarizedExperiment-class.R R/ExploratorySummarizedExperimentList-class.R R/accessory.R R/apps.R R/assaydatatable.R R/barplot.R R/boxplot.R R/chipseq.R R/clustering.R R/colormaker.R R/contrasts.R R/dendro.R R/dexseqplot.R R/dexseqtable.R R/differentialtable.R R/experimenttable.R R/foldchangeplot.R R/gene.R R/geneselect.R R/genesetanalysistable.R R/genesetbarcodeplot.R R/genesetselect.R R/groupby.R R/heatmap.R R/illuminaarray.R R/illuminaarrayqc.R R/labelselectfield.R R/maplot.R R/modal.R R/pca.R R/plotdownload.R R/readreports.R R/rnaseq.R R/rowmetatable.R R/sampleselect.R R/scatterplot.R R/scatterplotcontrols.R R/selectmatrix.R R/shinyngs.R R/simpletable.R R/summarisematrix.R R/upset.R R/volcanoplot.R README.Rmd README.md inst/doc/shinyngs.R inst/doc/shinyngs.Rmd
inst/doc/shinyngs.html
inst/inlinehelp/assaydatatable.md inst/inlinehelp/boxplot.md inst/inlinehelp/clustering.md inst/inlinehelp/clusteringheatmap.md inst/inlinehelp/dendro.md inst/inlinehelp/dexseqplot.md inst/inlinehelp/dexseqtable.md inst/inlinehelp/differentialtable.md inst/inlinehelp/experimenttable.md inst/inlinehelp/expressionheatmap.md inst/inlinehelp/foldchangeplot.md inst/inlinehelp/genesetanalysistable.md inst/inlinehelp/genesetbarcodeplot.md inst/inlinehelp/illuminaarrayqc.md inst/inlinehelp/maplot.md inst/inlinehelp/pca.md inst/inlinehelp/pcavsexperiment.md inst/inlinehelp/readreports.md inst/inlinehelp/rowmetatable.md inst/inlinehelp/upset.md inst/inlinehelp/volcanoplot.md
inst/www/shinyngs.css
man/ExploratorySummarizedExperiment-class.Rd man/ExploratorySummarizedExperiment.Rd man/ExploratorySummarizedExperimentList-class.Rd man/ExploratorySummarizedExperimentList.Rd man/annotatedHeatmap.Rd man/assaydatatable.Rd man/assaydatatableInput.Rd man/assaydatatableOutput.Rd man/barcode_plot.Rd man/barplot.Rd man/barplotInput.Rd man/barplotOutput.Rd man/bootstrapMedian.Rd man/boxplot.Rd man/boxplotInput.Rd man/boxplotOutput.Rd man/calculateDendrogram.Rd man/calculateDist.Rd man/calculatePCAFractionExplained.Rd man/cardinalNumericField.Rd man/chipseq.Rd man/chipseqInput.Rd man/chooseGroupingVariables.Rd man/clustering.Rd man/clusteringDendrogram.Rd man/clusteringInput.Rd man/clusteringOutput.Rd man/colGeomMeans.Rd man/colMedians.Rd man/colormaker.Rd man/colormakerInput.Rd man/contrasts.Rd man/contrastsInput.Rd man/contrastsOutput.Rd man/convertIds.Rd man/dendro.Rd man/dendroInput.Rd man/dendroOutput.Rd man/dexseqplot.Rd man/dexseqplotInput.Rd man/dexseqplotOutput.Rd man/dexseqtable.Rd man/dexseqtableInput.Rd man/dexseqtableInputFields.Rd man/dexseqtableOutput.Rd man/differentialtable.Rd man/differentialtableInput.Rd man/differentialtableOutput.Rd man/eselistFromYAML.Rd man/evaluateCardinalFilter.Rd man/experimenttable.Rd man/experimenttableInput.Rd man/experimenttableOutput.Rd man/fieldSets.Rd man/foldChange.Rd man/foldchangeplot.Rd man/foldchangeplotInput.Rd man/foldchangeplotOutput.Rd man/gene.Rd man/geneBarplot.Rd man/geneInput.Rd man/geneModelPlot.Rd man/geneOutput.Rd man/geneselect.Rd man/geneselectInput.Rd man/genesetanalysistable.Rd man/genesetanalysistableInput.Rd man/genesetanalysistableOutput.Rd man/genesetbarcodeplot.Rd man/genesetbarcodeplotInput.Rd man/genesetbarcodeplotOutput.Rd man/genesetselect.Rd man/genesetselectInput.Rd man/geom_mean.Rd man/ggplot_boxplot.Rd man/ggplotify.Rd man/groupby.Rd man/groupbyInput.Rd man/heatmap.Rd man/heatmapInput.Rd man/heatmapOutput.Rd man/hiddenInput.Rd man/idToLabel.Rd man/illuminaarray.Rd man/illuminaarrayInput.Rd man/illuminaarrayqc.Rd man/illuminaarrayqcInput.Rd man/illuminaarrayqcOutput.Rd man/inlineField.Rd man/interactiveHeatmap.Rd man/interleaveColumns.Rd man/labelMatrix.Rd man/labelselectfield.Rd man/labelselectfieldInput.Rd man/linkMatrix.Rd man/makeAnnotationColors.Rd man/makeColorScale.Rd man/makeContrastControl.Rd man/makeContrastFilterSet.Rd man/makePackageCitation.Rd man/maplot.Rd man/maplotInput.Rd man/maplotOutput.Rd man/modalInput.Rd man/modalOutput.Rd man/na.replace.Rd man/nlines.Rd man/pca.Rd man/pcaInput.Rd man/pcaOutput.Rd man/plotdownload.Rd man/plotdownloadInput.Rd man/plotly_boxplot.Rd man/plotly_quartiles.Rd man/prepareApp.Rd man/prettifyGeneSetName.Rd man/prettifyVariablename.Rd man/pushToList.Rd man/readreports.Rd man/readreportsInput.Rd man/readreportsOutput.Rd man/rnaseq.Rd man/rnaseqInput.Rd man/rowmetatable.Rd man/rowmetatableInput.Rd man/rowmetatableOutput.Rd man/runPCA.Rd man/sampleselect.Rd man/sampleselectInput.Rd man/scatterplot.Rd man/scatterplotInput.Rd man/scatterplotOutput.Rd man/scatterplotcontrols.Rd man/scatterplotcontrolsInput.Rd man/selectmatrix.Rd man/selectmatrixInput.Rd man/shinyngs.Rd man/simpleApp.Rd man/simpletable.Rd man/simpletableInput.Rd man/simpletableOutput.Rd man/simplifyContrastTable.Rd man/singleValidMatrix.Rd man/splitStringToFixedwidthLines.Rd man/summarisematrix.Rd man/summarisematrixInput.Rd man/summarizeMatrix.Rd man/summarySE.Rd man/ucfirst.Rd man/unpack.list.Rd man/upset.Rd man/upsetInput.Rd man/upsetOutput.Rd man/volcanoplot.Rd man/volcanoplotInput.Rd man/volcanoplotOutput.Rd
screenshots/gene_page.png
vignettes/._gene_page.png
vignettes/gene_page.png
vignettes/pca_highlighted.png
vignettes/shinyngs.Rmd
pinin4fjords/shinyngs documentation built on Aug. 27, 2017, 9:07 p.m.