upset: The server function of the upstart module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The server function of the upstart module

Description

This module illustrates the intersection of differential sets using a reimplementation of the upset tool of Lex, Gehlenborg et al. The reimplementation was done to allow use of more dynamic components, and to allow plotting of all elements in given intersections (rather than assigning every item to its highest-order intersection). It also seems to have sped things up.

Usage

upset(input, output, session, eselist, setlimit = 16)

Arguments

input	Input object
output	Output object
session	Session object
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects
setlimit	Maximum number of sets

Details

This function is not called directly, but rather via callModule() (see example).

References

Lex and Gehlenborg (2014). Points of view: Sets and intersections. <em>Nature Methods</em> 11, 779 (2014). http://www.nature.com/nmeth/journal/v11/n8/abs/nmeth.3033.html

Gehlenborg N (2016). <em>UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets</em>. R package version 1.3.0, https://CRAN.R-project.org/package=UpSetR

Examples

callModule(upstart, "myid", eselist)

pinin4fjords/shinyngs documentation built on Jan. 18, 2025, 7:09 p.m.