dexseqtableInput: The UI input function of the dexseqtable module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The UI input function of the dexseqtable module

Description

This module produces a differential exon usage table based on the output DEXSeqResults object of the DEXSeq package.

Usage

dexseqtableInput(id, eselist, allow_filtering = TRUE)

Arguments

id	Submodule namespace
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects
allow_filtering	Allow user filtering of results (default: TRUE)? Deactivated by the dexseqplot module, which uses it for showing gene-specific results.

Details

For the table to be displayed, the dexseq_results slot must be filled on at least one of the component ExploratorySummarizedExperiment objects of the input ExploratorySummarizedExperimentList.

dexseq_results must be a list of DEXSeqResults objects corresponding to the contrasts listed in the contrasts slot of the ExploratorySummarizedExperiment.

Leverages the simpletable module

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

dexseqtableInput("experiment", eselist)

pinin4fjords/shinyngs documentation built on July 4, 2025, 2:13 p.m.