dexseqplotOutput: The UI output function of the dexseqplot Shiny module....

In pinin4fjords/shinyngs: Shiny apps for NGS data

The UI output function of the dexseqplot Shiny module. Produces a plot and a table of values.

Description

This module produces a differential exon usage plot using the plotDEXSeq function of the DEXSeq package.

Usage

dexseqplotOutput(id, eselist)

Arguments

id	Submodule namespace
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

For the plot to be displayed, the dexseq_results slot must be filled on at least one of the component ExploratorySummarizedExperiment objects of the input ExploratorySummarizedExperimentList.

dexseq_results must be a list of DEXSeqResults objects corresponding to the contrasts listed in the contrasts slot of the ExploratorySummarizedExperiment.

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

dexseqplotOutput("experiment", eselist)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.