clusteringInput: The input function of the clustering module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The input function of the clustering module

Description

This module plots the expression profiles (scaled for comparison) of the selected rows of the input matrix provided by the selectmatrix module.

Usage

clusteringInput(id, eselist)

Arguments

id	Submodule namespace
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

The clara method, a fast approximation of partitioning about medoids, is used to produce the clusters. As well as defining the input matrix users can decide how the clusters are drawn and how many clusters should be generated.

This funcion provides the form elements to control the display

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

library(shinyngs)
data(zhangneurons)
clusteringInput("myid", zhangneurons)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.