read_contrasts: Read and validate a contrasts file against sample metadata

In pinin4fjords/shinyngs: Shiny apps for NGS data

Read and validate a contrasts file against sample metadata

Description

Read and validate a contrasts file against sample metadata

Usage

read_contrasts(
  filename,
  samples,
  variable_column = "variable",
  reference_column = "reference",
  target_column = "target",
  blocking_column = "blocking",
  convert_to_list = FALSE
)

Arguments

filename	Contrasts file
samples	Data frame of sample information
variable_column	Column in contrasts file referencing sample sheet column
reference_column	Column in contrast file referencing reference level of sample sheet variable
target_column	Column in contrast file referencing target level of sample sheet variable
blocking_column	Colon-separated column in contrast file referencing sample sheet variables to be used as blocking factors
convert_to_list	Convert output to a list as used internally by shinyngs?

Value

output Validated contrasts data frame

pinin4fjords/shinyngs documentation built on Jan. 18, 2025, 7:09 p.m.