scatterplot: Server function for the scatterplot module

In pinin4fjords/shinyngs: Shiny apps for NGS data

Server function for the scatterplot module

Description

This module uses Plotly to create scatter plots (see plot_ly), of both 2D and 3D varieties.

Usage

scatterplot(
  input,
  output,
  session,
  getDatamatrix,
  getThreedee = NULL,
  getXAxis = NULL,
  getYAxis = NULL,
  getZAxis = NULL,
  getShowLabels = NULL,
  getPointSize = NULL,
  getPalette = NULL,
  colorBy = NULL,
  getTitle = reactive({
     ""
 }),
  getLabels = reactive({
     rownames(getDatamatrix())
 }),
  allow_3d = TRUE,
  x = NA,
  y = NA,
  z = NA,
  getLines = reactive({
     NULL
 })
)

Arguments

input	Input object
output	Output object
session	Session object
getDatamatrix	Reactive supplying a matrix. If using external controls this should match the one supplied to scatterplotcontrols
getThreedee	A reactive defining whether to plot in 3D. If set to NULL (default), the scatterplotcontrols module will be called to create a set of inputs to supply this value and the axes etc.
getXAxis	NULL, or if getThreedee is a reactive, a reactive supplying an integer specifying which column of the matrix supplied by getDatamatrix should be used for this axis.
getYAxis	NULL, or if getThreedee is a reactive, a reactive supplying an integer specifying which column of the matrix supplied by getDatamatrix should be used for this axis.
getZAxis	NULL, or if getThreedee is a reactive, a reactive supplying an integer specifying which column of the matrix supplied by getDatamatrix should be used for this axis.
getShowLabels	NULL, or if getThreedee is a reactive, a reactive supplying a logical defining whether labels should be shown on points.
getPointSize	NULL, or if getThreedee is a reactive, a reactive supplying an integer point size to pass to plotly.
getPalette	An optional palette of colors, one for each level of colorBy.
colorBy	A reactive returning a factor definining the groups in which points should be colored.
getTitle	A reactive expression supplying a title.
getLabels	A reactive supplying a list of labels to use instead of row names from getDatamatrix()
allow_3d	Passed to scatterplotcontrolsInput to dermine if the user will be allowed to create 3D plots.
x	Passed to scatterplotcontrolsInput to determine how it produces an input field for selecting the x axis. A value supplied for this parameter will cause a hidden field to be generated instead of a select, useful for scatter plots that don't need the user to select axes (default: NA).
y	Passed to scatterplotcontrolsInput to determine how it produces an input field for selecting the y axis. A value supplied for this parameter will cause a hidden field to be generated instead of a select, useful for scatter plots that don't need the user to select axes (default: NA).
z	Passed to scatterplotcontrolsInput to determine how it produces an input field for selecting the z axis. A value supplied for this parameter will cause a hidden field to be generated instead of a select, useful for scatter plots that don't need the user to select axes (default: NA).
getLines	Reactive returning a data frame defining lines to be drawn. Three columns required: name, x and y, with two rows for every value of name. These two rows represent the start and end of a line.

Details

Controls for this module are provided by the scatterplotcontrols module, which is automatically called if reactives are not supplied to the server function. This setup allows the same set of controls to power multiple scatter plots.

pinin4fjords/shinyngs documentation built on Jan. 18, 2025, 7:09 p.m.