genesetselect: The server function of the genesetselect module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The server function of the genesetselect module

Description

The gene set module is for adding a gene set filter to displays. A selectizeInput is used for performance reasons, providing an autocomplete field for selecting from a list that could stretch to thousands of entries. This would be difficult to do client-side using a standard select field.

Usage

genesetselect(
  input,
  output,
  session,
  eselist,
  getExperiment,
  multiple = TRUE,
  filter_by_type = FALSE,
  require_select = TRUE
)

Arguments

input	Input object
output	Output object
session	Session object
eselist	An ExploratorySummarizedExperimentList with its gene_sets slot set
getExperiment	Accessor for returning an ExploratorySummarizedExperiment object, with 'labelfield' set in its slots
multiple	Boolean: should it be possible to select multiple gene sets?
filter_by_type	Provide a filter for gene set type?
require_select	Require a gene set selection?

Value

output A list of two reactive functions which will be used by other modules.

Examples

geneset_functions <- callModule(genesetselect, "heatmap", getExperiment)

pinin4fjords/shinyngs documentation built on Jan. 18, 2025, 7:09 p.m.