upsetOutput: The output function of the clustering module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The output function of the clustering module

Description

This module illustrates the intersection of differential sets using a reimplementation of the upset tool of Lex, Gehlenborg et al. The reimplementation was done to allow use of more dynamic components, and to allow plotting of all elements in given intersections (rather than assigning every item to its highest-order intersection). It also seems to have sped things up.

Usage

upsetOutput(id, eselist)

Arguments

id	Submodule namespace
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects

Details

This function provides the form elements to control the display

This provides actual plot element for display by applications

Value

output An HTML tag object that can be rendered as HTML using as.character()

References

Lex and Gehlenborg (2014). Points of view: Sets and intersections. <em>Nature Methods</em> 11, 779 (2014). http://www.nature.com/nmeth/journal/v11/n8/abs/nmeth.3033.html

Gehlenborg N (2016). <em>UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets</em>. R package version 1.3.0, https://CRAN.R-project.org/package=UpSetR

Examples

upsetOutput("myid", eselist)

pinin4fjords/shinyngs documentation built on Jan. 18, 2025, 7:09 p.m.