volcanoplotOutput: The output function of the 'volcanoplot' module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The output function of the volcanoplot module

Description

A volcano plot displays -log(10) of a p value/ FDR against a log(2) fold change on the x axis. This module produces such a plot using the scatterplot module (which uses plot_ly)), using data provided by the contrasts module based on the setting of contrasts in eselist.

Usage

volcanoplotOutput(id)

Arguments

id	Module namespace

Details

Leverages the scatterplot module

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

differentialtableOutput("experiment")

# However, almost certainly called via application creation:

data(zhangneurons)
app <- prepareApp("volcanoplot", zhangneurons)
shinyApp(ui = app$ui, server = app$server)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.