genesetbarcodeplotOutput: The output function of the genesetbarcodeplot module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The output function of the genesetbarcodeplot module

Description

This module leverages gene sets stored in the gene_sets slot of an ExploratorySummarizedExperimentList object to produce barcode plots using Limma's barcodeplot function. Genes are ranked by fold changes calculated with the contrasts module, and FDR values from the gene_set_analyses slot of the selected ExploratorySummarizedExperiment are displayed where provided.

Usage

genesetbarcodeplotOutput(id)

Arguments

id	Module namespace

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

genesetbarcodeplotOutput("experiment")

# Almost certainly used via application creation

app <- prepareApp("genesetbarcodeplot", zhangneurons)
shiny::shinyApp(ui = app$ui, server = app$server)

pinin4fjords/shinyngs documentation built on Feb. 28, 2024, 10:19 a.m.