selectmatrixInput: The UI input function of the selectmarix module

In pinin4fjords/shinyngs: Shiny apps for NGS data

The UI input function of the selectmarix module

Description

This module forms the core of many operations in shinyngs. To use the matrix data stored in an ExploratorySummarizedExperimentList object, selection must be made on the basis of experiment (which ExploratorySummarizedExperiment) to use), the specific assay of the experiment, and the rows and columns of the selected assay matrix. This module provides customisable controls for selection at each of these levels, and parses those inputs to produce matrices used in the various plots.

Usage

selectmatrixInput(id, eselist, require_contrast_stats = FALSE)

Arguments

id	Submodule namespace
eselist	ExploratorySummarizedExperimentList object containing ExploratorySummarizedExperiment objects
require_contrast_stats	Only use elements of eselist that have a populated contrast_stats slot. For plots using p value data etc, this is used to hide experiments that don't have the necessary data.

Details

The geneselect and sampleselect modules provide row- and column- selection, respectively. This will generally not be called directly, but by other modules such as the heatmap module.

Value

output An HTML tag object that can be rendered as HTML using as.character()

Examples

selectmatrixInput(ns("heatmap"), eselist)

pinin4fjords/shinyngs documentation built on June 29, 2024, 8:55 a.m.