eselistfromConfig: Build an ExploratorySummarisedExperimentList from a...
In pinin4fjords/shinyngs: Shiny apps for NGS data
eselistfromConfig R Documentation
Build an ExploratorySummarisedExperimentList from a description provided in a list
Description
Build an ExploratorySummarisedExperimentList from a description provided in a list
Usage
eselistfromConfig(config, log2_assays, log2_threshold = 30)
Arguments
config
Hierachical named list with input components. See eselistFromYAML for detail.
log2_assays
A string parameter that can be NULL, empty, or a non-empty string.
If NULL: log2 transformation will be guessed based on input assays.
If empty: no log2 transformation will be applied.
If non-empty: log2 transformation will be applied unconditionally to specified assays.
log2_threshold
A numeric threshold to determine if the matrix should be log-transformed.
This is only checked if should_transform is NULL.
Value
out An ExploratorySummarizedExperimentList object suitable for passing to prepareApp
pinin4fjords/shinyngs documentation built on July 4, 2025, 2:13 p.m.
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| eselistfromConfig | R Documentation |
Build an ExploratorySummarisedExperimentList from a description provided in a list
Description
Build an ExploratorySummarisedExperimentList from a description provided in a list
Usage
eselistfromConfig(config, log2_assays, log2_threshold = 30)
Arguments
config |
Hierachical named list with input components. See |
log2_assays |
A string parameter that can be NULL, empty, or a non-empty string. If NULL: log2 transformation will be guessed based on input assays. If empty: no log2 transformation will be applied. If non-empty: log2 transformation will be applied unconditionally to specified assays. |
log2_threshold |
A numeric threshold to determine if the matrix should be log-transformed. This is only checked if should_transform is NULL. |
Value
out An ExploratorySummarizedExperimentList object suitable for passing to prepareApp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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