plger/RNAontheBENCH
RNAontheBENCH - Benchmark of RNAseq quantification and DEA

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Vignettes
Functions
107
Source code
8
Man pages
49
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plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
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API

API for plger/RNAontheBENCH
RNAontheBENCH - Benchmark of RNAseq quantification and DEA

Global functions
.checkDataset Source code
.checkPkg Source code
.dopadj Source code
.getGeneQt Source code
.getSpikeinQt Source code
.getSpikeinsFromTranscripts Source code
.getTxQt Source code
.nfwrapper Source code
.plfilename Source code
.try.t Source code
MdAE Man page Source code
RNAontheBENCH Man page
RNAontheBENCH-package Man page
ROC Man page Source code
analyzeSpikein Man page Source code
auc Man page
benchmarkWrapper Man page Source code
checkMatIntegrity Man page Source code
compareSimulated Man page Source code
compareSpikeinDEcalls Man page Source code
compareWithNanostring Man page Source code
compareWithPCR Man page Source code
convertTx2Genes Man page Source code
counts2fpkm Man page Source code
counts2fpkmWrapper Man page Source code
deNanostring Man page Source code
deNanostring.compare Man page Source code
deSpikein Man page Source code
deSpikein.compare Man page Source code
donorm Man page Source code
fc2mean Man page Source code
fcdev Man page Source code
foldchange Man page Source code
fpkm2tpm Man page Source code
getLinearNormalizers Man page Source code
getLogFC Man page Source code
homomixes Man page Source code
isCleanData Man page Source code
mROC Man page Source code
maketrans Man page Source code
myc Man page Source code
package_sf_as_kal Man page Source code
plColorMap Man page Source code
plGetModel Man page Source code
plTryRead Man page Source code
posplot Man page Source code
pval2fc Man page Source code
readBenchmarkResults Man page Source code
runTests Man page Source code
seqc.diff Man page Source code
seqc.diff.example Man page Source code
seqc.diff.plot Man page Source code
seqc.diff.sleuth Man page Source code
seqc.get.stats Man page Source code
seqc.prepareData Man page Source code
sf_to_hdf5 Man page Source code
simStats Man page Source code
sleuthWrapper Man page Source code
sleuth_prep_sailfish Man page Source code
zscore Man page Source code
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.

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