compareSpikeinDEcalls: compareSpikeinDEcalls

In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA

Description

Benchmarks a list of differential expression calls between the two spike-in mixes.

Usage

compareSpikeinDEcalls(tests, thres = 0.01, colors = NULL)

Arguments

tests	A list of tests, each element of which should be a data.frame with a "p" column indicating the p-value under that test, and have ERCC IDs as row.names.
thres	Numeric value between 0 and 1, indicating the p-value treshold to use. Default 0.01.
colors	A vector of colors to be used (R arbitrary colors if NULL), or "greys" to use different tones of grey.

Value

A layout of two plots, with ROC curves on the left and a barplot of accuracy measurements on the right.

plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.