deSpikein.compare: deSpikein.compare
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
Description
Usage
Arguments
Value
View source: R/function.diff.R
Description
A wrapper to create spike-in DEA benchmarking plots
Usage
1
deSpikein.compare(d, quantification, norm = "", method = "")
Arguments
d
A data.frame with at least the columns "p" (for p-value) and "log2FC", as produced in the differentialExpression function.
quantification
Name of the pipeline that produced the underlying quantification, used in plot titles.
norm
Normalization method, used in plot titles.
method
DEA method, used in plot titles.
Value
Nothing.
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Value
View source: R/function.diff.R
Description
A wrapper to create spike-in DEA benchmarking plots
Usage
1 | deSpikein.compare(d, quantification, norm = "", method = "")
|
Arguments
d |
A data.frame with at least the columns "p" (for p-value) and "log2FC", as produced in the |
quantification |
Name of the pipeline that produced the underlying quantification, used in plot titles. |
norm |
Normalization method, used in plot titles. |
method |
DEA method, used in plot titles. |
Value
Nothing.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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