homomixes: Homogenizes the two spike-in mixes.
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
Description
Usage
Arguments
Value
View source: R/function.diff.R
Description
Divides spike-ins quantifications by their expected foldchange, thereby making all samples in principle equal. This is used for the purpose of calculating normalization factors.
Usage
1
Arguments
sp
Expression matrix or data.frame, with spike-in IDs as row.names.
mix1
The column headers of the samples that were spiked with mix1 (optional). This is detected automatically for the datasets included in this study.
Value
A data.frame including only the spike-ins, and with the two mixes 'homogenized'.
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/function.diff.R
Description
Divides spike-ins quantifications by their expected foldchange, thereby making all samples in principle equal. This is used for the purpose of calculating normalization factors.
Usage
1 |
Arguments
sp |
Expression matrix or data.frame, with spike-in IDs as row.names. |
mix1 |
The column headers of the samples that were spiked with mix1 (optional). This is detected automatically for the datasets included in this study. |
Value
A data.frame including only the spike-ins, and with the two mixes 'homogenized'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.