counts2fpkmWrapper: Convert counts matrix to FPKM matrix
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
Description
Usage
Arguments
Value
Description
Convert fragment counts to FPKM values, using the column sums as library sizes and effective length (see counts2fpkm).
Usage
1
counts2fpkmWrapper(r, level = "transcript", uniquelyMappableLengths = NULL)
Arguments
r
A numeric matrix or data.frame with samples as columns and genes/transcripts as rows.
level
Character, either "gene" or "tx", used to fetch the right lengths.
uniquelyMappableLengths
Whether to use the uniquely mappable lengths for transcripts (default TRUE).
Value
A matrix/data.frame of the corresponding FPKM values.
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Value
Description
Convert fragment counts to FPKM values, using the column sums as library sizes and effective length (see counts2fpkm).
Usage
1 | counts2fpkmWrapper(r, level = "transcript", uniquelyMappableLengths = NULL)
|
Arguments
r |
A numeric matrix or data.frame with samples as columns and genes/transcripts as rows. |
level |
Character, either "gene" or "tx", used to fetch the right lengths. |
uniquelyMappableLengths |
Whether to use the uniquely mappable lengths for transcripts (default TRUE). |
Value
A matrix/data.frame of the corresponding FPKM values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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