compareWithPCR: Gene-level comparison with RT-qPCR data
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
Description
Usage
Arguments
Value
Description
Loads and processes the RNAseq data before comparing it with the RT-qPCR quantification.
Will produce some benchmarking plots and files in the current working directory.
Usage
1
compareWithPCR(ANALYSIS_NAME, rnaseq = NULL, qt)
Arguments
ANALYSIS_NAME
A string indicating the name of the analysis/pipeline. Will be used in filenames, plot titles, etc.
rnaseq
The path to the gene-level RNAseq expression matrix. If not given, will look for relevant files in the working directory. The expression matrix should have gene symbols in the first column/row.names, and sample names (e.g. 'AJ80', etc) as column headers.
qt
A string indicating the unit of the expression matrix (either "FPKM", "TPM" or "COUNTS").
Value
Nothing, but produces many files in the working directory...
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Value
Description
Loads and processes the RNAseq data before comparing it with the RT-qPCR quantification. Will produce some benchmarking plots and files in the current working directory.
Usage
1 | compareWithPCR(ANALYSIS_NAME, rnaseq = NULL, qt)
|
Arguments
ANALYSIS_NAME |
A string indicating the name of the analysis/pipeline. Will be used in filenames, plot titles, etc. |
rnaseq |
The path to the gene-level RNAseq expression matrix. If not given, will look for relevant files in the working directory. The expression matrix should have gene symbols in the first column/row.names, and sample names (e.g. 'AJ80', etc) as column headers. |
qt |
A string indicating the unit of the expression matrix (either "FPKM", "TPM" or "COUNTS"). |
Value
Nothing, but produces many files in the working directory...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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