Description Usage Arguments Value
Loads and processes the RNAseq data before comparing it with the RT-qPCR quantification. Will produce some benchmarking plots and files in the current working directory.
1 | compareWithPCR(ANALYSIS_NAME, rnaseq = NULL, qt)
|
ANALYSIS_NAME |
A string indicating the name of the analysis/pipeline. Will be used in filenames, plot titles, etc. |
rnaseq |
The path to the gene-level RNAseq expression matrix. If not given, will look for relevant files in the working directory. The expression matrix should have gene symbols in the first column/row.names, and sample names (e.g. 'AJ80', etc) as column headers. |
qt |
A string indicating the unit of the expression matrix (either "FPKM", "TPM" or "COUNTS"). |
Nothing, but produces many files in the working directory...
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