Files in plger/RNAontheBENCH
RNAontheBENCH - Benchmark of RNAseq quantification and DEA
DESCRIPTION
LICENSE
NAMESPACE
R/AllGenerics.R
R/function.analyzeSpikein.R
R/function.compareWithNanostring.R
R/function.diff.R
R/function.pcr.R
R/function.simulated.R
R/seqc.R
R/sleuth_sailfish.R
README.md
data/annotation.rda
data/benchmark_report.rda
data/copynumbers.rda
data/dataset.rda
data/ercc.rda
data/exampledata.rda
data/genes.gtf.gz
data/genes_nd.gtf.gz
data/qpcr.rda
data/simulated.rda
data/w12_nanostring.rda
data/w6_nanostring.rda
inst/CITATION
man/MdAE.Rd
man/RNAontheBENCH-package.Rd
man/ROC.Rd
man/analyzeSpikein.Rd
man/auc.Rd
man/benchmarkWrapper.Rd
man/checkMatIntegrity.Rd
man/compareSimulated.Rd
man/compareSpikeinDEcalls.Rd
man/compareWithNanostring.Rd
man/compareWithPCR.Rd
man/convertTx2Genes.Rd
man/counts2fpkm.Rd
man/counts2fpkmWrapper.Rd
man/deNanostring.Rd
man/deNanostring.compare.Rd
man/deSpikein.Rd
man/deSpikein.compare.Rd
man/donorm.Rd
man/fc2mean.Rd
man/fcdev.Rd
man/foldchange.Rd
man/fpkm2tpm.Rd
man/getLinearNormalizers.Rd
man/getLogFC.Rd
man/homomixes.Rd
man/isCleanData.Rd
man/mROC.Rd
man/maketrans.Rd
man/myc.Rd
man/package_sf_as_kal.Rd
man/plColorMap.Rd
man/plGetModel.Rd
man/plTryRead.Rd
man/posplot.Rd
man/pval2fc.Rd
man/readBenchmarkResults.Rd
man/runTests.Rd
man/seqc.diff.Rd
man/seqc.diff.example.Rd
man/seqc.diff.plot.Rd
man/seqc.diff.sleuth.Rd
man/seqc.get.stats.Rd
man/seqc.prepareData.Rd
man/sf_to_hdf5.Rd
man/simStats.Rd
man/sleuthWrapper.Rd
man/sleuth_prep_sailfish.Rd
man/zscore.Rd
reference_manual.pdf
vignettes/RNAontheBENCH.Rmd
vignettes/figure/deNanostringEG-1.png
vignettes/figure/deSpikeinEG-1.png
vignettes/figure/seqcDiffEG-1.png
