deNanostring.compare: deNanostring.compare

Description Usage Arguments Value

View source: R/function.diff.R

Description

Compares the p-values and estimated foldchanges from a DEA analysis to a log-t-test performed on the nanostring data.

Usage

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deNanostring.compare(results, method, norm, quantification = "",
  threshold = 0.01)

Arguments

results

A dataframe as produced by the deNanostring function, with gene symbols as row names, and containing the columns "p" (p-value) and "log2FC".

method

The differential expression method used (for reporting only)

norm

The normalization method used (for reporting only)

quantification

The quantification used (for reporting only)

threshold

The p-value threshold applied on the Nanostring data to identify whether a gene is differentially-expressed or not.

Value

A layout with 3 plots


plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.