sleuth_prep_sailfish: sleuth_prep_sailfish
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA

Constructor for a 'sleuth' object using sailfish data

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sleuth_prep_sailfish(sf_dirs, sample_to_covariates, full_model,
  filter_fun = basic_filter, target_mapping = NULL, max_bootstrap = NULL,
  ...)

sf_dirs

a character vector of length greater than one where each string points to a sailfish output directory

Converts sailfish results to kallisto HDF5 format, then return the results of sleuth_prep on the converted data. TAKEN FROM SAILFISH/SALMON DEVELOPERS COMMIT ON THE SLEUTH GIT and provided as is; users are advised to double-check for updates on how to use salmon/sailfish data with sleuth.

See sleuth_prep for parameters other than sf_dirs.

plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.