counts2fpkm: Convert counts to FPKM values
In plger/RNAontheBENCH: RNAontheBENCH - Benchmark of RNAseq quantification and DEA
Description
Usage
Arguments
Value
Description
Convert fragment counts to FPKM values, using the sum as library size. By default, effective length is used, set mean.frag.size to 0 to use total (given) length.
Usage
1
counts2fpkm(counts, lengths, mean.frag.size = 220)
Arguments
counts
A numeric vector of counts (for one sample).
lengths
A numeric vector of same length as 'counts', indicating the length of each transcript.
mean.frag.size
A numeric value indicating the mean fragment size (default 220) used for effective length calculation.
Value
A numeric vector of the corresponding FPKM values.
plger/RNAontheBENCH documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Value
Description
Convert fragment counts to FPKM values, using the sum as library size. By default, effective length is used, set mean.frag.size to 0 to use total (given) length.
Usage
1 | counts2fpkm(counts, lengths, mean.frag.size = 220)
|
Arguments
counts |
A numeric vector of counts (for one sample). |
lengths |
A numeric vector of same length as 'counts', indicating the length of each transcript. |
mean.frag.size |
A numeric value indicating the mean fragment size (default 220) used for effective length calculation. |
Value
A numeric vector of the corresponding FPKM values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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