Man pages for rlebron-bioinfo/gnlearn
Genetic Network Learning
| add.edges | Add Edges To A Graph |
| add.genes | Add Genes To A Graph |
| aracne | ARACNE Algorithm |
| arges | Adaptively Restricted Greedy Equivalence Search Algorithm... |
| as.adjacency | Convert Graph To Adjacency Matrix |
| as.bnlearn | Convert Graph To bnlearn Format |
| as.edges | Convert Graph To Edge List |
| as.graph | Convert Graph To graph Format |
| as.igraph | Convert Graph To igraph Format |
| average.graph | Calculate The Average Graph |
| boot.aracne | ARACNE Algorithm With Bootstrapping |
| boot.arges | Adaptively Restricted Greedy Equivalence Search Algorithm... |
| boot.chowliu | Chow-Liu Algorithm With Bootstrapping |
| boot.fci | Fast Causal Inference Algorithm (FCI) With Bootstrapping |
| boot.gclm | Graphical Continuous Lyapunov Models (GCLM) With... |
| boot.genie3 | GEne Network Inference with Ensemble of trees (GENIE3) with... |
| boot.ges | Greedy Equivalence Search Algorithm (GES) With Bootstrapping |
| boot.glasso | Graphical Lasso (GLASSO) With Bootstrapping |
| boot.gs | Grow-Shrink Algorithm (GS) With Bootstrapping |
| boot.hc | Hill-Climbing Algorithm (HC) With Bootstrapping |
| boot.iamb | Incremental Association Algorithm (IAMB) With Bootstrapping |
| boot.lingam | Restricted Structural Equation Models (LINGAM) With... |
| boot.nodag | NODAG Algorithm With Bootstrapping |
| boot.notears | Linear NO-TEARS Algorithm (Reimplemented) With Bootstrapping |
| boot.parents.children | Parents & Children Algorithm With Bootstrapping |
| boot.pc | Peter & Clark Algorithm (PC) With Bootstrapping |
| boot.rsmax2 | General 2-Phase Restricted Maximization Algorithm (rsmax2)... |
| boot.skeleton | Peter & Clark Skeleton Algorithm With Bootstrapping |
| boot.tabu | Tabu Search Algorithm (TABU) With Bootstrapping |
| chowliu | Chow-Liu Algorithm |
| compare.graphs | Graph Comparison |
| convert.format | Graph Format Conversion |
| dataset.split | Split A Dataset Into Training And Test Datasets |
| delete.edges | Delete Edges To A Graph |
| delete.genes | Delete Genes From A Graph |
| delete.isolated | Delete Isolated Nodes |
| detect.format | Graph Format Detection |
| directed.edges | Return Directed Edges |
| download.dataset | Download A Dataset Via RESTful API |
| download.geneset | Download A Geneset Via RESTful API |
| download.graph | Download A Graph Via RESTful API |
| drop.all.zeros | Drop rows and/or columns with all zeros |
| drugs.plot | Drug-Gene Interactions Plotting |
| export.dataset | Export A Dataset To A File |
| export.geneset | Export A Geneset To A File |
| export.graph | Export A Graph To A File |
| fci | Fast Causal Inference Algorithm (FCI) |
| feature.degree | Feature Degree Per Gene |
| feature.plot | Feature Graph Plotting |
| filter.dataset | Select (automatically) the most appropriate gene columns and... |
| fit.coefficients | Estimate The Coefficients Of An Adjacency Matrix |
| gclm | Graphical Continuous Lyapunov Models (GCLM) |
| gene.clustering | Gene Clustering |
| gene.correlation | Plot expression correlation of genes in your dataset. |
| gene.degree | Degree Per Gene |
| gene.histogram | Plot expression histograms of genes in your dataset. |
| genie3 | GEne Network Inference with Ensemble of trees (GENIE3) |
| ges | Greedy Equivalence Search Algorithm (GES) With Bootstrapping |
| glasso | Graphical Lasso (GLASSO) |
| graph.communities | Graph Communities |
| graph.plot | Graph Plotting |
| ground.truth | Create a Ground Truth Graph |
| gs | Grow-Shrink Algorithm (GS) |
| hc | Hill-Climbing Algorithm (HC) |
| huge.graph | Learn Huge Graph (With Random Gene Selection + Cells... |
| iamb | Incremental Association Algorithm (IAMB) |
| import.dataset | Import A Local Dataset |
| import.geneset | Import A Local Geneset |
| import.graph | Import A Local Graph |
| lingam | Restricted Structural Equation Models (LINGAM) |
| list.datasets | List Datasets Available Via RESTful API |
| list.genesets | List Genesets Available Via RESTful API |
| list.graphs | List Graphs Available Via RESTful API |
| make.edgelist | Make an edgelist from some genes to anothers. |
| nodag | NODAG Algorithm |
| notears | Linear NO-TEARS Algorithm (Reimplemented) |
| ortholog.graph | Ortholog Genes Graph |
| parents.children | Parents & Children Algorithm |
| pc | Peter & Clark Algorithm (PC) |
| random.graph | Generate A Random Graph/DAG |
| rename.genes | Rename Genes To A Graph |
| rsmax2 | General 2-Phase Restricted Maximization Algorithm (rsmax2) |
| score.graph | Compute The Score Of A Graph |
| select.cells | Select (automatically) the most appropriate cell rows of your... |
| select.genes | Select (automatically) the most appropriate gene columns of... |
| skeleton | Peter & Clark Skeleton Algorithm |
| tabu | Tabu Search Algorithm (TABU) |
| undirected.edges | Return Undirected Edges |
