bases2ambiguous: Convert set of single bases to ambiguous code
In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses
bases2ambiguous R Documentation
Convert set of single bases to ambiguous code
Description
Convert set of single bases to ambiguous code
Usage
bases2ambiguous(bases)
Arguments
bases
vector of character sequences all the same number of characters
Value
single character string with ambiguous nucleotide codes representing any differences between sequences
References
https://en.wikipedia.org/wiki/Nucleic_acid_notation
Examples
seqs<-c('ACTAGG','ACGTGG','ACCTGG','ACATGG')
ambig<-bases2ambiguous(seqs)
pattern<-ambiguous2regex(ambig)
grepl(pattern,seqs)
sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| bases2ambiguous | R Documentation |
Convert set of single bases to ambiguous code
Description
Convert set of single bases to ambiguous code
Usage
bases2ambiguous(bases)
Arguments
bases |
vector of character sequences all the same number of characters |
Value
single character string with ambiguous nucleotide codes representing any differences between sequences
References
https://en.wikipedia.org/wiki/Nucleic_acid_notation
Examples
seqs<-c('ACTAGG','ACGTGG','ACCTGG','ACATGG')
ambig<-bases2ambiguous(seqs)
pattern<-ambiguous2regex(ambig)
grepl(pattern,seqs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.