findIntrons | R Documentation |
Convert set of starts and ends of exons to introns
findIntrons( starts, ends, names = 1:length(startList), additionalColumns = NULL )
starts |
starts for exons given as a comma separated string for each "gene" or list of numeric vectors |
ends |
ends for exons given as a comma separated string for each "gene" or list of numeric vectors |
names |
vector of each "gene". Output data.frame will contain a column name with name_in + intron number |
additionalColumns |
a data.frame with a row for each starts and columns giving additional information |
A data.frame with columns startAfter giving the base before the intron, length giving the length of intron and name of intron where name is the input names + "_in" + number. Note that startAfter and length are used to allow zero length introns
findIntrons(c('1,100','50,150,8000'),c('50,150','148,185,9000'))
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