findIntrons: Convert set of starts and ends of exons to introns

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Convert set of starts and ends of exons to introns

Description

Convert set of starts and ends of exons to introns

Usage

findIntrons(
  starts,
  ends,
  names = 1:length(startList),
  additionalColumns = NULL
)

Arguments

starts	starts for exons given as a comma separated string for each "gene" or list of numeric vectors
ends	ends for exons given as a comma separated string for each "gene" or list of numeric vectors
names	vector of each "gene". Output data.frame will contain a column name with name_in + intron number
additionalColumns	a data.frame with a row for each starts and columns giving additional information

Value

A data.frame with columns startAfter giving the base before the intron, length giving the length of intron and name of intron where name is the input names + "_in" + number. Note that startAfter and length are used to allow zero length introns

Examples

findIntrons(c('1,100','50,150,8000'),c('50,150','148,185,9000'))

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.