cigarToBlock | R Documentation |
Convert cigar and starts to qStarts, tStarts, blockSizes as in blat
cigarToBlock(cigars, starts, startEnds = FALSE)
cigars |
vector of SAM cigar strings |
starts |
vector of starting positions in target |
startEnds |
if FALSE single line with comma separated starts, if TRUE data.frame with single start, end and id column |
dataframe with qStarts,tStarts,sizes if !startEnds or dataframe with starts, ends and ids if startEnds
cigars<-c('100M','10H10M1000H','10M10I20M10D2M','10S10M10H','100M10000N100M') starts<-1:5 cigarToBlock(cigars,starts) cigarToBlock(cigars,starts,startEnds=TRUE)
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