Files in sherrillmix/dnar
Miscellaneous functions to deal with bioinformatic analyses
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/454.R
R/abundance.R
R/data.R
R/dna.R
R/misc.R
R/rainbow.R
R/readFiles.R
R/runBlat.R
README.md
data-raw/makeData.R
data/ambiguousBaseCodes.RData
data/aminoAcids.RData
data/reverseAmbiguous.RData
data/samFlags.RData
makefile
man/aa2codons.Rd
man/aa2dna.Rd
man/addSnpsToGenome.Rd
man/adjustWindow.Rd
man/allSameLength.Rd
man/ambiguous2regex.Rd
man/ambiguousBaseCodes.Rd
man/aminoAcids.Rd
man/anyArgsNA.Rd
man/arrow.Rd
man/bases2ambiguous.Rd
man/binary2range.Rd
man/blat2exons.Rd
man/blatFindGaps.Rd
man/blatReadsVsRefs.Rd
man/blockToAlign.Rd
man/cacheOperation.Rd
man/chao.Rd
man/checkBlat.Rd
man/chooseAtLeastOneFromEach.Rd
man/cigarToBlock.Rd
man/cleanMclapply.Rd
man/codons2aa.Rd
man/complementDna.Rd
man/conservativeBoundary.Rd
man/convertLineToUser.Rd
man/convertUserToLine.Rd
man/countNmers.Rd
man/cumpaste.Rd
man/cutBlatReads.Rd
man/cv.glm.par.Rd
man/degap.Rd
man/dna2aa.Rd
man/dna2codons.Rd
man/escapeRegexBracketChars.Rd
man/expandAmbiguous.Rd
man/fillCover.Rd
man/fillDown.Rd
man/fillList.Rd
man/fillZeros.Rd
man/findIntrons.Rd
man/flow2seq.Rd
man/gap2NoGap.Rd
man/gcPercent.Rd
man/generateFasta.Rd
man/gini.Rd
man/highlightDifferences.Rd
man/highlightString.Rd
man/index2range.Rd
man/indexFlow.Rd
man/indexMatrix.Rd
man/insetScale.Rd
man/intsToQual.Rd
man/isError.Rd
man/jensenShannon.Rd
man/killBlat.Rd
man/kullback.Rd
man/lagNA.Rd
man/liftCoords.Rd
man/logAxis.Rd
man/mostAbundant.Rd
man/movingStat.Rd
man/multiBlatReadsVsRefs.Rd
man/multiRunBlatNoServer.Rd
man/multiYAxis.Rd
man/noGap2Gap.Rd
man/object.sizes.Rd
man/orderIn.Rd
man/pRare.Rd
man/parseRegion.Rd
man/pasteRegion.Rd
man/pullRegion.Rd
man/pwm.Rd
man/pwmToSeq.Rd
man/qualToInts.Rd
man/rainbow.lab.Rd
man/rao.Rd
man/rareEquation.Rd
man/rarefy.Rd
man/rarefyCounts.Rd
man/read.ace.Rd
man/read.bed.Rd
man/read.blast.Rd
man/read.blat.Rd
man/read.fa.Rd
man/read.fastq.Rd
man/read.phd.Rd
man/read.sam.Rd
man/read.wiggle.Rd
man/readFaDir.Rd
man/readLargeBlat.Rd
man/revComp.Rd
man/reverseAmbiguous.Rd
man/reverseString.Rd
man/runBlat.Rd
man/runBlatNoServer.Rd
man/samFlag.Rd
man/samFlags.Rd
man/samView.Rd
man/scoreFromPWM.Rd
man/seq2flow.Rd
man/seqSplit.Rd
man/shannon.Rd
man/slantAxis.Rd
man/stackRegions.Rd
man/startBlat.Rd
man/stopError.Rd
man/table2vector.Rd
man/toggleCase.Rd
man/trimNs.Rd
man/unifracMatrix.Rd
man/wilsonInt.Rd
man/withAs.Rd
man/write.fa.Rd
man/write.fastq.Rd
tests/testthat.R
tests/testthat/test_454.R
tests/testthat/test_abundance.R
tests/testthat/test_dna.R
tests/testthat/test_misc.R
tests/testthat/test_rainbow.R
tests/testthat/test_readFiles.R
