Files in sherrillmix/dnar
Miscellaneous functions to deal with bioinformatic analyses

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/454.R R/abundance.R R/data.R R/dna.R R/misc.R R/rainbow.R R/readFiles.R R/runBlat.R README.md data-raw/makeData.R
data/ambiguousBaseCodes.RData
data/aminoAcids.RData
data/reverseAmbiguous.RData
data/samFlags.RData
makefile
man/aa2codons.Rd man/aa2dna.Rd man/adjustWindow.Rd man/allSameLength.Rd man/ambiguous2regex.Rd man/ambiguousBaseCodes.Rd man/aminoAcids.Rd man/anyArgsNA.Rd man/arrow.Rd man/bases2ambiguous.Rd man/binary2range.Rd man/blat2exons.Rd man/blatFindGaps.Rd man/blatReadsVsRefs.Rd man/blockToAlign.Rd man/cacheOperation.Rd man/chao.Rd man/checkBlat.Rd man/chooseAtLeastOneFromEach.Rd man/cigarToBlock.Rd man/cleanMclapply.Rd man/codons2aa.Rd man/complementDna.Rd man/conservativeBoundary.Rd man/convertLineToUser.Rd man/convertUserToLine.Rd man/countNmers.Rd man/cumpaste.Rd man/cutBlatReads.Rd man/cv.glm.par.Rd man/degap.Rd man/dna2aa.Rd man/dna2codons.Rd man/escapeRegexBracketChars.Rd man/expandAmbiguous.Rd man/fillCover.Rd man/fillDown.Rd man/fillList.Rd man/fillZeros.Rd man/findIntrons.Rd man/flow2seq.Rd man/gap2NoGap.Rd man/gcPercent.Rd man/generateFasta.Rd man/gini.Rd man/highlightDifferences.Rd man/highlightString.Rd man/index2range.Rd man/indexFlow.Rd man/indexMatrix.Rd man/insetScale.Rd man/intsToQual.Rd man/isError.Rd man/jensenShannon.Rd man/killBlat.Rd man/kullback.Rd man/lagNA.Rd man/liftCoords.Rd man/logAxis.Rd man/mostAbundant.Rd man/movingStat.Rd man/multiBlatReadsVsRefs.Rd man/multiRunBlatNoServer.Rd man/noGap2Gap.Rd man/object.sizes.Rd man/orderIn.Rd man/pRare.Rd man/parseRegion.Rd man/pasteRegion.Rd man/pullRegion.Rd man/pwm.Rd man/pwmToSeq.Rd man/qualToInts.Rd man/rainbow.lab.Rd man/rao.Rd man/rareEquation.Rd man/rarefy.Rd man/rarefyCounts.Rd man/read.ace.Rd man/read.bed.Rd man/read.blast.Rd man/read.blat.Rd man/read.fa.Rd man/read.fastq.Rd man/read.phd.Rd man/read.sam.Rd man/read.wiggle.Rd man/readFaDir.Rd man/readLargeBlat.Rd man/revComp.Rd man/reverseAmbiguous.Rd man/reverseString.Rd man/runBlat.Rd man/runBlatNoServer.Rd man/samFlag.Rd man/samFlags.Rd man/samView.Rd man/scoreFromPWM.Rd man/seq2flow.Rd man/seqSplit.Rd man/shannon.Rd man/slantAxis.Rd man/stackRegions.Rd man/startBlat.Rd man/stopError.Rd man/table2vector.Rd man/toggleCase.Rd man/trimNs.Rd man/unifracMatrix.Rd man/wilsonInt.Rd man/withAs.Rd man/write.fa.Rd man/write.fastq.Rd tests/testthat.R tests/testthat/test_454.R tests/testthat/test_abundance.R tests/testthat/test_dna.R tests/testthat/test_misc.R tests/testthat/test_rainbow.R tests/testthat/test_readFiles.R
sherrillmix/dnar documentation built on Sept. 12, 2017, 9:30 p.m.