read.fastq | R Documentation |
Read fastq file
read.fastq(fileName, convert = FALSE, baseQual = 33, ...)
fileName |
name of fastq file |
convert |
if TRUE convert condensed quals to space separated numeric quals |
baseQual |
integer to subtract from quality characters to convert into quality space |
... |
additional arguments to |
dataframe with name, seq, qual
fastq<-c( "@SEQ_ID", "GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT", "+", "!''*((((***+))%%%++)(%%%%).1***-+*''))**55CCF>>>>>>CCCCCCC65" ) read.fastq(textConnection(fastq))
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