cutBlatReads: Take the output from blat and make continous reads out of it
In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses
cutBlatReads R Documentation
Take the output from blat and make continous reads out of it
Description
Take the output from blat and make continous reads out of it
Usage
cutBlatReads(seqs, starts, fillStarts = NULL, fillEnds = NULL, gaps = NULL)
Arguments
seqs
comma separated target sequences from blat
starts
comma separated starting location for each piece of sequence 0 indexed
fillStarts
start base for each output sequence 0 indexed
fillEnds
total length for each output sequence
gaps
list of matrices with columns tGaps and qGaps
Value
vector of sequences
sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.
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| cutBlatReads | R Documentation |
Take the output from blat and make continous reads out of it
Description
Take the output from blat and make continous reads out of it
Usage
cutBlatReads(seqs, starts, fillStarts = NULL, fillEnds = NULL, gaps = NULL)
Arguments
seqs |
comma separated target sequences from blat |
starts |
comma separated starting location for each piece of sequence 0 indexed |
fillStarts |
start base for each output sequence 0 indexed |
fillEnds |
total length for each output sequence |
gaps |
list of matrices with columns tGaps and qGaps |
Value
vector of sequences
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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