generateFasta: Generate fake name and sequence data

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Generate fake name and sequence data

Description

Generate fake name and sequence data

Usage

generateFasta(
  nSeq = 10000,
  nChar = 100:1000,
  bases = c("A", "C", "T", "G", "-", "N"),
  generateQuals = FALSE,
  qualRange = 1:40,
  baseQual = 33
)

Arguments

nSeq	number of sequences to generate
nChar	possible lengths of sequences
bases	possible bases
generateQuals	if TRUE generate qualities for each sequence
qualRange	The range of possible qualities
baseQual	integer to subtract from quality characters to convert into quality space

Value

data.frame with nSeq rows and columns name and seq (and qual if generateQuals is TRUE)

Examples

generateFasta(10,10:20)
generateFasta(10,10:20,generateQuals=TRUE)

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.