read.fa: Read a fasta file

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Read a fasta file

Description

Read a fasta file

Usage

read.fa(fileName, assumeSingleLine = FALSE, ...)

Arguments

fileName	name of file
assumeSingleLine	if TRUE don't process sequence lines. just assume they're one line per sequence
...	additional arguments to readLines

Value

data.frame with columns name and seq

Examples

file<-tempfile()
x<-generateFasta(100,bases=c('A','C','T','G','\n','-'))
write.fa(x$name,x$seq,file)
y<-read.fa(file)

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.