read.sam | R Documentation |
Read a sam file
read.sam(fileName, nrows = -1, skips = -1, condense = TRUE)
fileName |
name of file |
nrows |
number of rows to return. -1 for all rows |
skips |
number of lines to skip (if negative find @ headers automtically) |
condense |
throw out a bunch of columns for smaller file size? |
dataframe with columns qName, flag, tName, pos, cigar, seq
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