samFlag: Test sam flags for values

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Test sam flags for values

Description

Test sam flags for values

Usage

samFlag(flags, test = "paired")

Arguments

flags	vector of integer flags from sam
test	either character vector of flag short names or integers

Value

logical vector with element for each element in flags with TRUE if flag meets all tests and FALSE otherwise

Examples

print(samFlags)
samFlag(1:10,'paired')
samFlag(1:10,'unmapped')

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.