read.blast | R Documentation |
Read a tab-delimited blast file
read.blast(fileName, skips = 0, nrows = -1, calcScore = TRUE)
fileName |
name of file |
skips |
number of lines to skip (0 for a normal blast file) |
nrows |
number of rows to read in (-1 for all) |
calcScore |
if TRUE, calculate score column |
dataframe of blat data
blastString<-c( "read1 target1 34.56 100 2 1 101 200 400 500 1e-11 96", "read2 target2 100 1000 200 10 102 1100 401 2000 1e-21 123" ) read.blast(textConnection(blastString))
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