scoreFromPWM: Calculate PWM scores for sequences
In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses
scoreFromPWM R Documentation
Calculate PWM scores for sequences
Description
Calculate PWM scores for sequences
Usage
scoreFromPWM(seqs, pwm)
Arguments
seqs
vector of strings, sequences to score
pwm
position weight matrix with uniqueBases x seqLength dimensions
Value
vector with a score for each sequence
Examples
seqs<-c('ACA','ACA','ACA','ACT','ACT','ACC')
seqPwm<-pwm(seqs)
scoreFromPWM(seqs,seqPwm)
sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.
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| scoreFromPWM | R Documentation |
Calculate PWM scores for sequences
Description
Calculate PWM scores for sequences
Usage
scoreFromPWM(seqs, pwm)
Arguments
seqs |
vector of strings, sequences to score |
pwm |
position weight matrix with uniqueBases x seqLength dimensions |
Value
vector with a score for each sequence
Examples
seqs<-c('ACA','ACA','ACA','ACT','ACT','ACC')
seqPwm<-pwm(seqs)
scoreFromPWM(seqs,seqPwm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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