read.ace: Read an ace file
In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses
read.ace R Documentation
Read an ace file
Description
Read an ace file
Usage
read.ace(aceFile, dropMosaik = TRUE, checkSnps = TRUE, vocal = TRUE)
Arguments
aceFile
string of file name or file handle
dropMosaik
Remove extraneous line from Mosaik labelled either .MosaikAnchor.C1 or MosaikReference
checkSnps
Find SNPs from pyroBayes
vocal
if TRUE print status messages
Value
list of reference sequence in [[1]], aligned reads in [[2]] (note reads are not globally aligned still need to use start coordinate to place globally), snps in [[3]]
Warning
Only reads 1 contig
sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.
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| read.ace | R Documentation |
Read an ace file
Description
Read an ace file
Usage
read.ace(aceFile, dropMosaik = TRUE, checkSnps = TRUE, vocal = TRUE)
Arguments
aceFile |
string of file name or file handle |
dropMosaik |
Remove extraneous line from Mosaik labelled either .MosaikAnchor.C1 or MosaikReference |
checkSnps |
Find SNPs from pyroBayes |
vocal |
if TRUE print status messages |
Value
list of reference sequence in [[1]], aligned reads in [[2]] (note reads are not globally aligned still need to use start coordinate to place globally), snps in [[3]]
Warning
Only reads 1 contig
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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