liftCoords | R Documentation |
Run liftover to convert coordinates from one genome version to another
liftCoords( chr, start, end, strand, chainFile, liftoverBin = "liftOver", vocal = FALSE, removeNAs = TRUE )
chr |
vector of chromosomes |
start |
vector of start coordinate 1-based |
end |
vector of end coordinate 1-based |
strand |
vector of strands |
chainFile |
location of chain file for liftover |
liftoverBin |
location of the liftOver executable |
vocal |
if TRUE then message extra information |
removeNAs |
if TRUE then remove positions that did could not be lifted over |
four column data frame of chr, start, end and strand of coordinates
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